Bio::Tools::Tmhmm - parse TmHMM output (transmembrane HMM)
use Bio::Tools::Tmhmm; my $parser = new Bio::Tools::Tmhmm(-fh =>$filehandle ); while( my $tmhmm_feat = $parser->next_result ) { #do something #eg push @tmhmm_feat, $tmhmm_feat; }
Parser for Tmhmm output
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = new Bio::Tools::Tmhmm(); Function: Builds a new Bio::Tools::Tmhmm object Returns : Bio::Tools::Tmhmm Args : -fh/-file => $val, # for initing input, see Bio::Root::IO
Title : next_result Usage : my $feat = $Tmhmm->next_result Function: Get the next result set from parser data Returns : Bio::SeqFeature::Generic Args : none
Title : create_feature Usage : obj->create_feature(\%feature) Function: Internal(not to be used directly) Returns : A Bio::SeqFeature::Generic object Args :
Title : _seqname Usage : obj->_seqname($seqname) Function: Internal(not to be used directly) Returns : Args : seqname
To install LocalConfig, copy and paste the appropriate command in to your terminal.
cpanm
cpanm LocalConfig
CPAN shell
perl -MCPAN -e shell install LocalConfig
For more information on module installation, please visit the detailed CPAN module installation guide.