Bio::Factory::SequenceFactoryI - This interface allows for generic building of sequences in factories which create sequences (like SeqIO)
# do not use this object directly it is an interface # get a Bio::Factory::SequenceFactoryI object like
use Bio::Seq::SeqFactory; my $seqbuilder = new Bio::Seq::SeqFactory('type' => 'Bio::PrimarySeq'); my $seq = $seqbuilder->create(-seq => 'ACTGAT', -display_id => 'exampleseq'); print "seq is a ", ref($seq), "\n";
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : create Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name'); Function: Instantiates new Bio::PrimarySeqI (or one of its child classes) This object allows us to genericize the instantiation of sequence objects. Returns : Bio::PrimarySeqI Args : initialization parameters specific to the type of sequence object we want. Typically -seq => $str, -display_id => $name
To install LocalConfig, copy and paste the appropriate command in to your terminal.
cpanm
cpanm LocalConfig
CPAN shell
perl -MCPAN -e shell install LocalConfig
For more information on module installation, please visit the detailed CPAN module installation guide.