NAME

Bio::Tools::SignalP

SYNOPSIS

 use Bio::Tools::SignalP;
 my $parser = new Bio::Tools::SignalP(-fh =>$filehandle );
 while( my $sp_feat = $parser->next_result ) {
       #do something
       #eg
       push @sp_feat, $sp_feat;
 }

DESCRIPTION

 Parser for SignalP output

FEEDBACK

Mailing Lists

 User feedback is an integral part of the evolution of this and other
 Bioperl modules. Send your comments and suggestions preferably to
 the Bioperl mailing list.  Your participation is much appreciated.

 bioperl-l@bioperl.org              - General discussion
 http://bioperl.org/MailList.shtml  - About the mailing lists

Reporting Bugs

 Report bugs to the Bioperl bug tracking system to help us keep track
 of the bugs and their resolution. Bug reports can be submitted via
 email or the web:

 bioperl-bugs@bio.perl.org
 http://bugzilla.bioperl.org/

AUTHOR

 Based on the EnsEMBL module Bio::EnsEMBL::Pipeline::Runnable::Protein::Signalp
 originally written by Marc Sohrmann (ms2@sanger.ac.uk)
 Written in BioPipe by Balamurugan Kumarasamy <savikalpa@fugu-sg.org>
 Cared for by the Fugu Informatics team (fuguteam@fugu-sg.org)

APPENDIX

 The rest of the documentation details each of the object methods.
 Internal methods are usually preceded with a _

new

 Title   : new
 Usage   : my $obj = new Bio::Tools::SignalP();
 Function: Builds a new Bio::Tools::SignalP object
 Returns : Bio::Tools::SignalP
 Args    : -fh/-file => $val, # for initing input, see Bio::Root::IO

next_result

 Title   : next_result
 Usage   : my $feat = $signalp->next_result
 Function: Get the next result set from parser data
 Returns : Bio::SeqFeature::Generic
 Args    : none

create_feature

 Title   : create_feature
 Usage   : obj->create_feature(\%feature)
 Function: Internal(not to be used directly)
 Returns :
 Args    :

seqname

 Title   : seqname
 Usage   : obj->seqname($name)
 Function: Internal(not to be used directly)
 Returns :
 Args    :

fact1

 Title   : fact1
 Usage   : obj->fact1($fact1)
 Function: Internal(not to be used directly)
 Returns :
 Args    :