RelationshipType - a relationship type for an ontology
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This class can be used to model various types of relationships (such as "IS_A", "PART_OF", "CONTAINS", "FOUND_IN").
This class extends Bio::Ontology::Term.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : get_instance Usage : $IS_A = Bio::Ontology::RelationshipType->get_instance( "IS_A" ); $PART_OF = Bio::Ontology::RelationshipType->get_instance( "PART_OF" ); $CONTAINS = Bio::Ontology::RelationshipType->get_instance( "CONTAINS" ); $FOUND_IN = Bio::Ontology::RelationshipType->get_instance( "FOUND_IN" ); Function: Factory method to create instances of RelationshipType Returns : [Bio::Ontology::RelationshipType] Args : "IS_A" or "PART_OF" or "CONTAINS" or "FOUND_IN" [scalar]
Title : init() Usage : $type->init(); Function: Initializes this to all undef and empty lists. Returns : Args :
Title : equals Usage : if ( $type->equals( $other_type ) ) { ... Function: Compares this type to another one, based on string "eq" of the "identifier" field Returns : true or false Args : [Bio::Ontology::RelationshipType]
Title : identifier Usage : $term->identifier( "IS_A" ); or print $term->identifier(); Function: Set/get for the immutable identifier of this Type. Returns : The identifier [scalar]. Args : The identifier [scalar] (optional).
Title : name Usage : $term->name( "is a type" ); or print $term->name(); Function: Set/get for the immutable name of this Type. Returns : The name [scalar]. Args : The name [scalar] (optional).
Title : definition Usage : $term->definition( "" ); or print $term->definition(); Function: Set/get for the immutable definition of this Type. Returns : The definition [scalar]. Args : The definition [scalar] (optional).
Title : category Usage : $term->category( $top ); or $top = $term->category(); Function: Set/get for a immutable relationship between this Type and another Term (e.g. the top level of the ontology). Returns : The category [TermI]. Args : The category [TermI or scalar -- which becomes the name of the catagory term] (optional).
Title : version Usage : $term->version( "1.00" ); or print $term->version(); Function: Set/get for immutable version information. Returns : The version [scalar]. Args : The version [scalar] (optional).
Title : is_obsolete Usage : $term->is_obsolete( 1 ); or if ( $term->is_obsolete() ) Function: Set/get for the immutable obsoleteness of this Type. Returns : the obsoleteness [0 or 1]. Args : the obsoleteness [0 or 1] (optional).
Title : comment Usage : $term->comment( "..." ); or print $term->comment(); Function: Set/get for an arbitrary immutable comment about this Type. Returns : A comment. Args : A comment (optional).
To install LocalConfig, copy and paste the appropriate command in to your terminal.
cpanm
cpanm LocalConfig
CPAN shell
perl -MCPAN -e shell install LocalConfig
For more information on module installation, please visit the detailed CPAN module installation guide.