Bio::Taxonomy - Conversion used bt the Taxonomy classes
use Bio::Taxonomy;
Provides methods for converting classifications into taxonomic structures.
Dan Kortschak email kortschak@rsbs.anu.edu.au
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = new Bio::Taxonomy(); Function: Builds a new Bio::Taxonomy object Returns : Bio::Taxonomy Args : -method -> method used to decide classification (none|trust|lookup) -ranks -> what ranks are there
Title : method Usage : $obj = taxonomy->method($method); Function: set or return the method used to decide classification Returns : $obj Args : $obj
Title : classify Usage : @obj[][0-1] = taxonomy->classify($species); Function: return a ranked classification Returns : @obj of taxa and ranks as word pairs separated by "@" Args : Bio::Species object
Title : level_of_rank Usage : $obj = taxonomy->level_of_rank($obj); Function: returns the level of a rank name Returns : $obj Args : $obj
Title : rank_of_number Usage : $obj = taxonomy->rank_of_number($obj); Function: returns the rank name of a rank level Returns : $obj Args : $obj
Title : ranks Usage : @obj = taxonomy->ranks(@obj); Function: set or return all ranks Returns : @obj Args : @obj
To install LocalConfig, copy and paste the appropriate command in to your terminal.
cpanm
cpanm LocalConfig
CPAN shell
perl -MCPAN -e shell install LocalConfig
For more information on module installation, please visit the detailed CPAN module installation guide.