Bio::TreeIO::svggraph - A simple output format that converts a Tree object to an SVG output
use Bio::TreeIO; my $in = new Bio::TreeIO(-file => 'input', -format => 'newick'); my $out = new Bio::TreeIO(-file => '>output', -format => 'svggraph'); while( my $tree = $in->next_tree ) { my $svg_xml = $out->write_tree($tree); }
This outputs a tree as an SVG graphic using the SVG::Graph API
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = new Bio::TreeIO::svggraph(); Function: Builds a new Bio::TreeIO::svggraph object Returns : Bio::TreeIO::svggraph Args :
Title : write_tree Usage : $treeio->write_tree($tree); Function: Write a tree out to data stream in newick/phylip format Returns : none Args : Bio::Tree::TreeI object
Title : _decorateRoot Usage : internal methods Function: Example : Returns : Args :
Title : next_tree Usage : Function: Sorry not possible with this format Returns : none Args : none
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.