Bio::Tradis::TradisPlot - Generate plots as part of a tradis analysis
version 1.132190
Generate insertion plots for Artemis from a mapped fastq file and a reference in GFF format
use Bio::Tradis::TradisPlot; my $pipeline = Bio::Tradis::TradisPlot->new(mappedfile => 'abc'); $pipeline->plot();
mappedfile - mapped and sorted BAM file
mappedfile
plot - create insertion site plots for reads in `mappedfile`. This file will be readable by the Artemis genome browser
plot
Carla Cummins <cc21@sanger.ac.uk>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
2 POD Errors
The following errors were encountered while parsing the POD:
=over should be: '=over' or '=over positive_number'
You forgot a '=back' before '=head1'
To install Bio::Tradis, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Tradis
CPAN shell
perl -MCPAN -e shell install Bio::Tradis
For more information on module installation, please visit the detailed CPAN module installation guide.