bp_mrtrans - implement a transformer of alignments from protein to mrna coordinates
Usage: bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output format] [-s cDNA sequence database] [-sf cDNA sequence format] [-h]
This script will convert a protein alignment back into a cDNA. Loosely based on Bill Pearson's mrtrans.
The options are:
-o filename - the output filename [default STDOUT] -of format - output sequence format (multiple sequence alignment) [default phylip] -i filename - the input filename [required] -if format - input sequence format (multiple sequence alignment) [ default clustalw] -s --seqdb filename - the cDNA sequence database file -sf --seqformat - the cDNA seq db format (flatfile sequence format) -h - this help menu
Jason Stajich, jason-at-bioperl-dot-org
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.