Bio::SeqIO::tigrxml - Parse TIGR (new) XML
use Bio::SeqIO; my $in = Bio::SeqIO->new(-format => 'tigrcoordset', -file => 'file.xml'); while( my $seq = $in->next_seq ) { # do something... }
This is a parser for TIGR Coordset XML for their in-progress annotation dbs.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
http://bugzilla.bioperl.org
Email jason-at-bioperl-dot-org
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.