Bio::Tools::Profile - parse Profile output
use Bio::Tools::Profile; my $profile_parser = Bio::Tools::Profile->new(-fh =>$filehandle ); while( my $profile_feat = $profile_parser->next_result ) { push @profile_feat, $profile_feat; }
Parser for Profile output
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::Tools::Profile->new(); Function: Builds a new Bio::Tools::Profile object Returns : Bio::Tools::Profile Args : -filename -fh ($filehandle)
Title : next_result Usage : my $feat = $profile_parser->next_result Function: Get the next result set from parser data Returns : L<Bio::SeqFeature::FeaturePair> Args : none
Title : create_feature Usage : my $feat= $profile_parser->create_feature($feature) Function: creates a Bio::SeqFeature::FeaturePair object Returns : L<Bio::SeqFeature::FeaturePair> Args :
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.