++ed by:
PINGAN MAJENSEN FIBO ILUX PROCH

11 PAUSE users
14 non-PAUSE users.

Christopher Fields
and 1 contributors

NAME

Bio::Tools::Primer::Feature - position of a single primer

SYNOPSIS

    use Bio::Tools::Primer::Feature;

    my $pf = Bio::Tools::Primer::Feature->new( -start => $start, -end => $end, -strand => $strand);
    $pf->attach_seq($seq);

    # is a SeqFeatureI

    print "primer starts at ",$pf->start," with sequence ",$pf->seq->seq(),"\n";

    # helper functions

    print "GC percentage ",$pf->gc(),"\n";
    print "has inversion of size 4 at ",$pf->inversion(4),"\n";

DESCRIPTION

Primer Features represents one primer in a primer pair. This object is mainly for designing primers, and probably principly used in the primer design system

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  http://bugzilla.open-bio.org/

AUTHOR - Ewan Birney

Email birney-at-ebi.ac.uk

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _