- AUTHOR - Jason Stajich
Bio::Seq::SeqFastaSpeedFactory - Instantiates a new Bio::PrimarySeqI (or derived class) through a factory
use Bio::Seq::SeqFastaSpeedFactory; my $factory = Bio::Seq::SeqFastaSpeedFactory->new(); my $seq = $factory->create(-seq => 'WYRAVLC', -id => 'name'); # If you want the factory to create Bio::Seq objects instead # of the default Bio::PrimarySeq objects, use the -type parameter: my $factory = Bio::Seq::SeqFastaSpeedFactory->new(-type => 'Bio::Seq');
This object will build Bio::Seq objects generically.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::Seq::SeqFastaSpeedFactory->new(); Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object Returns : Bio::Seq::SeqFastaSpeedFactory Args : -type => string, name of a PrimarySeqI derived class This is optional. Default=Bio::PrimarySeq.
Title : create Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name'); Function: Instantiates a new Bio::Seq object, correctly built but very fast, knowing stuff about Bio::PrimarySeq and Bio::Seq Returns : Bio::Seq Args : initialization parameters specific to the type of sequence object we want. Typically -seq => $str, -id => $name