++ed by:
FIBO CJFIELDS MAJENSEN THALJEF GENEHACK

11 PAUSE users
13 non-PAUSE users.

Christopher Fields

NAME

Bio::TreeIO::nhx - TreeIO implementation for parsing Newick/New Hampshire eXtendend (NHX) format.

SYNOPSIS

  # do not use this module directly
  use Bio::TreeIO;
  my $treeio = Bio::TreeIO->new(-format => 'nhx', -file => 'tree.dnd');
  my $tree = $treeio->next_tree;

DESCRIPTION

This module handles parsing and writing of Newick/New Hampshire eXtended (NHX) format.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted viax the web:

  http://bugzilla.open-bio.org/

AUTHOR - Aaron Mackey

Email amackey-at-virginia.edu

CONTRIBUTORS

Email jason-at-bioperl-dot-org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

next_tree

 Title   : next_tree
 Usage   : my $tree = $treeio->next_tree
 Function: Gets the next tree in the stream
 Returns : Bio::Tree::TreeI
 Args    : none

write_tree

 Title   : write_tree
 Usage   : $treeio->write_tree($tree);
 Function: Write a tree out to data stream in nhx format
 Returns : none
 Args    : Bio::Tree::TreeI object