Bio::LiveSeq::Translation - Translation class for LiveSeq
#documentation needed
This stores informations about aminoacids translations of transcripts. The implementation is that a Translation object is the translation of a Transcript object, with different possibilities of manipulation, different coordinate system and eventually its own ranges (protein domains).
Email: Insana@ebi.ac.uk, jinsana@gmx.net
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : $protein = Bio::LiveSeq::Translation->new(-transcript => $transcr); Function: generates a new Bio::LiveSeq::Translation Returns : reference to a new object of class Translation Errorcode -1 Args : reference to an object of class Transcript
Title : valid Usage : $transcript = $obj->get_Transcript() Function: retrieves the reference to the object of class Transcript (if any) attached to a LiveSeq object Returns : object reference Args : none
Title : aa_ranges Usage : @proteinfeatures = $translation->aa_ranges() Function: to retrieve all the LiveSeq AARange objects attached to a Translation, usually created out of a SwissProt database entry crossreferenced from an EMBL CDS feature. Returns : an array Args : none
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.