bp_generate_histogram.pl -- Generate a histogram of Bio::DB::GFF features
bp_generate_histogram.pl -d gadfly variation gene:curated
Use this utility to generate feature density histograms from Bio::DB::GFF databases. The result is a GFF data file that is suitable for loading with load_gff.pl.
The following options are recognized:
Option Description ------ ----------- --dsn <dsn> Data source (default dbi:mysql:test) --adaptor <adaptor> Schema adaptor (default dbi::mysqlopt) --user <user> Username for mysql authentication --pass <password> Password for mysql authentication --aggregator <list> Comma-separated list of aggregators
Please report them.
Bio::DB::GFF
Lincoln Stein <lstein@cshl.org>
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.
To install BioPerl, copy and paste the appropriate command in to your terminal.
cpanm
cpanm BioPerl
CPAN shell
perl -MCPAN -e shell install BioPerl
For more information on module installation, please visit the detailed CPAN module installation guide.