reverse-translate.pl
Reverse-translates a nucleotide sequence using the most frequent codons. Requires an input sequence file and a nucleotide sequence file containing one sequence comprised of one or more ORFs. This file supplies the codon frequency data and will be parsed starting at the first triplet in the sequence.
-i Input sequence, amino acid -c Input sequence, nucleotide ORFs
Example:
reverse-translate.pl -i ~/bioperl-live/t/data/cysprot.fa -c ~/bioperl-live/t/data/HUMBETGLOA.fa
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.