Bio::Network::Edge - holds the names of pairs of Nodes
use Bio::Network; # get a network, somehow, then: my @edges = $graph->edges; for my $edge (@edges) { for my $node ($edge->[0],$edge->[1]) { my @proteins = $node->proteins; for my $protein (@proteins) { print "Sequence is: ", $protein->seq, "\n"; } } }
This class contains the names of the Nodes in a bi-molecular interaction. An Edge object is extremely simple as most of the experimental or biological detail goes into the Interaction objects.
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Brian Osborne bosborne at alum.mit.edu Richard Adams richard.adams@ed.ac.uk
Maintained by Brian Osborne
Name : new Purpose : Constructor for an Edge object Usage : my $edge = Bio::Network::Edge->new(-nodes => \@nodes); Returns : A new Bio::Network::Edge object Arguments : -nodes => reference to an array containing a pair of Nodes
Name : nodes Purpose : Get the pair of nodes for an Edge Usage : my $count = $edge->nodes or my @nodes = $edge->nodes Returns : Gets an array of 2 Nodes or a count of the number of Nodes Arguments : Notes : Getting a count of the number of Nodes in an edge will almost always return 2, but there is a formal possibility that a Node could interact with itself, returning 1
Name : Purpose : Usage : Returns : Arguments :
To install Bio::Network::IO, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Network::IO
CPAN shell
perl -MCPAN -e shell install Bio::Network::IO
For more information on module installation, please visit the detailed CPAN module installation guide.