Chris Mungall

NAME

  GO::Tango - Tango ANnotates GO

SYNOPSIS

DESCRIPTION

THIS IS ALPHA CODE; API SUBJECT TO CHANGE

CREDITS

PUBLIC METHODS

new

  Usage   - $tango = GO::Tango->new({apph=>$apph})
  Returns - GO::Tango
  Args    -

xrefs_to_terms

  Usage   - $terms = $tango->xrefs_to_terms([$xref1, $xref2])
  OR      - $terms =
               $tango->xrefs_to_terms(-dbname=>"interpro",
                                      -xrefs=>["IPR00001", "IPR000002"])
  OR      - $terms =
               $tango->xrefs_to_terms(["interpro:IPR000001", "interpro:IPR000001"]);
  Usage   - $terms = $tango->xrefs_to_terms([$xref1, $xref2])
  Usage   - $terms = $tango->xrefs_to_terms([$xref1, $xref2])
  Returns - GO::Model::Term listref
  Args    - GO::Model::Xref list

evaluate_guess

  Usage   -
  Returns -
  Args    -

get_seq_xrefs_stats

  Usage   - $h = $apph->get_seq_xrefs_stats({term=>4888}, "InterPro");
  Returns - hashref
  Args    - constr [hash], dbname [str]

STATUS: ALPHA (subject to change)

returns a hashref keyed by accession nos with the count of each accession

eg the example query above will return a hash of interpro domain ids with the total number of times that interpro domain occurs in all the sequences of all products attached to or below transmembrane receptor

FEEDBACK

Email cjm@fruitfly.berkeley.edu

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself