GO::Parsers::go_assoc_parser - syntax parsing of GO gene-association flat files
do not use this class directly; use GO::Parser
This generates Stag/XML event streams from GO association files. Examples of these files can be found at http://www.geneontology.org, an example of lines from an association file:
SGD S0004660 AAC1 GO:0005743 SGD:12031|PMID:2167309 TAS C ADP/ATP translocator YMR056C gene taxon:4932 20010118 SGD S0004660 AAC1 GO:0006854 SGD:12031|PMID:2167309 IDA P ADP/ATP translocator YMR056C gene taxon:4932 20010118
See http://www.geneontology.org/GO.annotation.shtml#file
See http://www.godatabase.org/dev/xml/dtd/go_assoc-parser-events.dtd For the DTD of the event stream that is generated
The following stag-schema describes the events that are generated in parsing an assoc file:
(assocs (dbset+ (proddb "s") (prod+ (prodacc "s") (prodsymbol "s") (prodtype "s") (prodtaxa "i") (assoc+ (assocdate "i") (source_db "s") (termacc "s") (is_not "i") (aspect "s") (evidence+ (evcode "s") (ref "s"))))))
To install GO::Utils, copy and paste the appropriate command in to your terminal.
cpanm
cpanm GO::Utils
CPAN shell
perl -MCPAN -e shell install GO::Utils
For more information on module installation, please visit the detailed CPAN module installation guide.