Bio::MUST::Apps::TwoScalp - Main class for two-scalp tool
version 0.180160
# get documentation $ two-scalp.pl --man # align unaligned sequences within provided example ALI file $ two-scalp.pl test/PTHR22663.ali --out=-ts
two-scapl.pl is an application to align or re-align sequences in existing multiple sequences alignments (FASTA or ALI file formats). Its main engine is BLAST https://blast.ncbi.nlm.nih.gov/.
two-scapl.pl
Note that only alignable regions of the sequences are added to the alignment, which may lead to discarding low-conserved regions. Moreover, some sequences can generate multiple aligned fragments (BLAST HSPs). If you do not like this behavior, two-scalp.pl is not for you!
two-scalp.pl
Denis BAURAIN <denis.baurain@uliege.be>
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bio::MUST::Apps::TwoScalp, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::MUST::Apps::TwoScalp
CPAN shell
perl -MCPAN -e shell install Bio::MUST::Apps::TwoScalp
For more information on module installation, please visit the detailed CPAN module installation guide.