jack-ali-dir.pl - Jackknife a directory of ALI files
version 0.181120
jack-ali-dir.pl <indirs> [optional arguments]
Path to input directories containing ALI files [repeatable argument].
Number of jackknife replicates [default: 100].
Number of positions to be included in each replicate [default: 100000]. This actually specifies a lower bound on replicate width. For each replicate, this script will randomly add ALI files until their combined width reaches becomes greater than this value. To ignore constant positions in the tally, use the --del-const option below.
--del-const
Delete constant sites just as the -dc option of PhyloBayes [default: no].
-dc
Print the usual program information
Denis BAURAIN <denis.baurain@uliege.be>
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bio::MUST::Core, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::MUST::Core
CPAN shell
perl -MCPAN -e shell install Bio::MUST::Core
For more information on module installation, please visit the detailed CPAN module installation guide.