setup-taxdir.pl - Setup a local mirror of the NCBI Taxonomy database
version 0.181180
setup-taxdir.pl --tax=<dir> [optional arguments]
Path to the directory to be created.
Rebuild the binary cache file (cachedb.bin) without re-downloading NCBI Taxonomy files. This is useful to enable custom .dmp files (e.g., misleading.dmp) that were manually added to the directory [default: no].
cachedb.bin
.dmp
misleading.dmp
Additionally setup optional mapper file associating taxids to GI numbers for all nucleotide and protein sequences stored in GenBank [default: no].
This file is compiled from two large NCBI archives (1GB and 388 MB as of 12/2014) that can be lengthy to download. Once built, the GI-to-taxid mapper does not occupy a lot of disk space (2 GB as of 12/2014). However, its building process currently requires about 10x more free space.
Print the usual program information
Denis BAURAIN <denis.baurain@uliege.be>
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bio::MUST::Core, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::MUST::Core
CPAN shell
perl -MCPAN -e shell install Bio::MUST::Core
For more information on module installation, please visit the detailed CPAN module installation guide.