prune-tree.pl - Prune tips from TREE files based on id lists
version 0.191300
prune-tree.pl <infiles> [optional arguments]
Path to input IDL files [repeatable argument].
Substring(s) to strip from infile basenames before attempting to derive other infile (e.g., TREE files) and outfile names [default: none].
Suffix to append to (possibly stripped) infile basenames for deriving outfile names [default: none]. When not specified, outfile names are taken from infiles but original infiles are preserved by being appended a .bak suffix.
Path to an optional TREE file (e.g., a supermatrix tree) that will be the target of the pruning operations [default: none]. Otherwise, each IDL file is assumed to match a similarly named TREE (.tre) file.
Consider the input file as generated by ed/treeplot [default: no]. Currently, this switches to the legacy .lis format (instead of the modern .idl format).
Interpret the list as a negative list instead of a positive list [default: no]. This means that seqs corresponding to listed ids are discarded.
Print the usual program information
Denis BAURAIN <denis.baurain@uliege.be>
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bio::MUST::Core, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::MUST::Core
CPAN shell
perl -MCPAN -e shell install Bio::MUST::Core
For more information on module installation, please visit the detailed CPAN module installation guide.