OBO::CCO::NCBIToRDF - A NCBI taxonomy dump to RDF converter.
Converts NCBI taxonomy dump files (names and nodes) to a RDF graph.
NCBI taxonomy dump files files can be obtained from ftp://ftp.ncbi.nih.gov/pub/taxonomy/
The method 'work' gets the nodes file, the names file, and file handler for the RDF graph.
Mikel Egana Aranguren mikel.egana.aranguren@gmail.com
Copyright (C) 2008 by Mikel Egana Aranguren
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.7 or, at your option, any later version of Perl 5 you may have available.
Usage - $NCBIToRDF->work($NCBINodesFilePath,$NCBINamesFilePath,$RDF_file_handler) Returns - RDF file handler Args - The paths to the NCBI nodes and names files and a file handler for the new RDF file Function - Converts NCBI nodes and NCBI names to an RDF graph.
Usage - $ontology->char_hex_http($seq) Returns - the sequence with the hexadecimal representation for the http special characters Args - the sequence of characters Function - Transforms a http character to its equivalent one in hexadecimal. E.g. : -> %3A
To install OBO::Core::Def, copy and paste the appropriate command in to your terminal.
cpanm
cpanm OBO::Core::Def
CPAN shell
perl -MCPAN -e shell install OBO::Core::Def
For more information on module installation, please visit the detailed CPAN module installation guide.