ONTO-PERL - perl modules for CCO and OBO ontologies
'ONTO-PERL' a collection of perl modules for dealing with the Cell Cycle Ontology (CCO) and in general with OBO ontologies (like the Gene Ontology). This code distribution gathers object-oriented modules (for dealing with the ontology elements such as Term, Relationship, and so forth), scripts (for typical tasks such as format conversions: obo2owl, owl2obo; besides, there are also many examples that can be easily adapted for specific applications), and a set of test files for ensuring the implementation quality.
See also:
1. perldoc ONTO-PERL.pod 2. ONTO-PERL: An API supporting the development and analysis of bio-ontologies E. Antezana; M. Egana; B. De Baets; M. Kuiper; V. Mironov Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042
Some files in 'ONTO-PERL':
README Readme file
INSTALL How to install ONTO-PERL (requirements)
LICENSE ONTO-PERL's license
ONTO-PERL-x.y.tar.gz ONTO-PERL API: version x.y
ONTO-PERL-latest.tar.gz ONTO-PERL API: latest version
Changes Description about the changes in 'ONTO-PERL'
Remark:
'ONTO-PERL' is provided "as-is". The current version is stable; nonetheless, improvements are expected as well as feedback is very welcome. Please visit constantly this repository for checking up-to-date versions of this distribution.
Contact:
Any comments, suggestions can be addressed to:
Erick Antezana erick.antezana@gmail.com
Erick Antezana, <erick.antezana@gmail.com>
Copyright (C) 2006, 2007, 2008, 2009, 2010 by Erick Antezana
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.7 or, at your option, any later version of Perl 5 you may have available.
To install OBO::Util::Set, copy and paste the appropriate command in to your terminal.
cpanm
cpanm OBO::Util::Set
CPAN shell
perl -MCPAN -e shell install OBO::Util::Set
For more information on module installation, please visit the detailed CPAN module installation guide.