--i, input file (required) --o, output file (required) --lib, library type (default is sanger) --dup, remove duplicate reads --qf, filter by phred probability (quality) --dist, std deviations between Phred min and mean --lf, filter by read length --truseq, removes truseq adapters from reads --trim_l, trim reads starting at left end --trim_r, trim reads starting at left end --adpt, remove a user supplied adapter --fasta, convert to fastA format --dna_rna, convert reads to RNA --rev_comp, reverse complement reads --no_n, remove non-designated bases from reads --help, Print this help
To install fastQ_brew, copy and paste the appropriate command in to your terminal.
cpanm
cpanm fastQ_brew
CPAN shell
perl -MCPAN -e shell install fastQ_brew
For more information on module installation, please visit the detailed CPAN module installation guide.