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ALBD-0.05
River stage zero No dependents
++
/ runDiscovery.pl

NAME

runDiscovery.pl This program runs literature based discovery with the parameters specified in the input file. Please see samples/lbd or samples/thresholding for sample input files and descriptions of parameters and full details on what can be in an LBD input file.

SYNOPSIS

This utility takes an lbd configuration file and outputs the results of lbd

USAGE

Usage: umls-assocation.pl [OPTIONS] LBD_CONFIG_FILE

INPUT

LBD_CONFIG_FILE

Configuration file specifying the parameters of LBD. See '../config/lbd' for an example

OPTIONS

Optional command line arguements

General Options:

--help

displays help, a quick summary of program options

--assocConfig

path to a UMLS::Association configuration file. Default location is '../config/association'. Replace this file for your computer to avoid having to specify each time.

--interfaceConfig

path to a UMLS::Interface configuration file. Default location is '../config/interface'. Replace this file for your computer to avoid having to specify each time.

--debug

enter debug mode

--version

display the version number

OUTPUT

A file containing the results of LBD

SYSTEM REQUIREMENTS

  • Perl (version 5.16.5 or better) - http://www.perl.org

  • UMLS::Interface - http://search.cpan.org/dist/UMLS-Interface

  • UMLS::Association - http://search.cpan.org/dist/UMLS-Association

CONTACT US

  If you have any trouble installing and using ALBD, 
  You may contact us directly :
    
      Sam Henry: henryst at vcu.edu

AUTHOR

 Sam Henry, Virginia Commonwealth University

COPYRIGHT

Copyright (c) 2017

 Sam Henry, Virginia Commonwealth University 
 henryst at vcu.edu

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to:

 The Free Software Foundation, Inc.,
 59 Temple Place - Suite 330,
 Boston, MA  02111-1307, USA.