HPC::Runner::Threads - Job submission using threads
Version 0.01
Use Parallel::ForkManager to run arbitrary bash commands
How frequently to test for a thread having exited the queue in seconds. Defaults to once every 60 seconds. If your jobs are very fast, you may want to decrease this number, or vice versa if they are very long.
This uses Parallel::ForkManager to deploy the threads. If you wish to use something else you must redefine it here.
This is the main application. It starts the logging, build the threads, parses the file, runs the commands, and finishes logging.
Parse the file of commands and send each command off to the queue.
#TODO #Merge mce/threads subroutines
This is the command to build the threads. To change this just add a build_threads method in your script.
$self->threads->run_on_wait( sub { $self->log->debug("** Queue full. Waiting for one process to end ..."); }, $self->twait, );
or
package Main; extends 'HPC::Runner::Threads'; sub build_threads { $self->threads->run_on_wait( sub { $self->log->debug("** This is my custom message"); }, $self->twait, ); }
Parallel::ForkManager, HPC::Runner::GnuParallel
Jillian Rowe, <jillian.e.rowe at gmail.com>
<jillian.e.rowe at gmail.com>
Please report any bugs or feature requests to bug-runner-init at rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=HPC-Runner-Threads. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.
bug-runner-init at rt.cpan.org
You can find documentation for this module with the perldoc command.
perldoc HPC::Runner::Threads
You can also look for information at:
RT: CPAN's request tracker (report bugs here)
http://rt.cpan.org/NoAuth/Bugs.html?Dist=HPC-Runner-Threads
AnnoCPAN: Annotated CPAN documentation
http://annocpan.org/dist/HPC-Runner-Threads
CPAN Ratings
http://cpanratings.perl.org/d/HPC-Runner-Threads
Search CPAN
http://search.cpan.org/dist/HPC-Runner-Threads/
This module was originally developed at and for Weill Cornell Medical College in Qatar within ITS Advanced Computing Team. With approval from WCMC-Q, this information was generalized and put on github, for which the authors would like to express their gratitude.
Copyright 2014 Weill Cornell Medical College Qatar.
This program is free software; you can redistribute it and/or modify it under the terms of the the Artistic License (2.0). You may obtain a copy of the full license at:
http://www.perlfoundation.org/artistic_license_2_0
Any use, modification, and distribution of the Standard or Modified Versions is governed by this Artistic License. By using, modifying or distributing the Package, you accept this license. Do not use, modify, or distribute the Package, if you do not accept this license.
If your Modified Version has been derived from a Modified Version made by someone other than you, you are nevertheless required to ensure that your Modified Version complies with the requirements of this license.
This license does not grant you the right to use any trademark, service mark, tradename, or logo of the Copyright Holder.
This license includes the non-exclusive, worldwide, free-of-charge patent license to make, have made, use, offer to sell, sell, import and otherwise transfer the Package with respect to any patent claims licensable by the Copyright Holder that are necessarily infringed by the Package. If you institute patent litigation (including a cross-claim or counterclaim) against any party alleging that the Package constitutes direct or contributory patent infringement, then this Artistic License to you shall terminate on the date that such litigation is filed.
Disclaimer of Warranty: THE PACKAGE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS "AS IS' AND WITHOUT ANY EXPRESS OR IMPLIED WARRANTIES. THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, OR NON-INFRINGEMENT ARE DISCLAIMED TO THE EXTENT PERMITTED BY YOUR LOCAL LAW. UNLESS REQUIRED BY LAW, NO COPYRIGHT HOLDER OR CONTRIBUTOR WILL BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING IN ANY WAY OUT OF THE USE OF THE PACKAGE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
To install HPC::Runner::Threads, copy and paste the appropriate command in to your terminal.
cpanm
cpanm HPC::Runner::Threads
CPAN shell
perl -MCPAN -e shell install HPC::Runner::Threads
For more information on module installation, please visit the detailed CPAN module installation guide.