Jessica Michelle Severin

NAME

 Bio::Das::ProServer::SourceAdaptor::edgeexpress
 Auto-config ProServer that talks with an EdgeExpress database

VERSION

$LastChangedRevision: 2 $

SYNOPSIS

 An auto-config ProServer that talks with an EdgeExpress database
  - auto-configs segments and sources from the database
  - Builds simple DAS features from the EdgeExpress database
  - uses EdgeExpress perl API for enhanced speed and smart caching

DESCRIPTION

capabilities

DIAGNOSTICS

CONFIGURATION AND ENVIRONMENT

  [my_eedb]
  state          = on
  adaptor        = edgeexpress
  transport      = edgeexpress
  eedb_url       = mysql://<user>:<pass>@<host>:<port optional>/<database_name>
  assembly       = <assembly name as used in the eeDB>  #eeDB is multi_species, each DAS source is not
  description    = description of the EdgeExpressDB this is configured for

DEPENDENCIES

 ProServer
   Bio::Das::ProServer::SourceAdaptor

 EdgeExpress
   EEDB::FeatureSource;
   EEDB::Feature;
   EEDB::Assembly;
   EEDB::Chrom;

INCOMPATIBILITIES

BUGS AND LIMITATIONS

AUTHOR

 Jessica Severin <severin@gsc.riken.jp>.

LICENSE AND COPYRIGHT

APPENDIX

 The rest of the documentation details each of the object methods. 
 Internal methods are usually preceded with a _

SUBROUTINES/METHODS