bg_fasplit.pl - split sequences in fasta files by given regular expression
bg_fasplit.pl [options] <regex> <file>
<regex> the split pattern in form of a perl regular expression <file> input sequence file in fata format
Options:
--help brief help message --clean_seq clean DNA sequence (mask unknown characters with N) --include_junk sequence matched by <regex> will be included in the output --seq_f <file> write the split sequences into <file>
To install Bio::Gonzales, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Gonzales
CPAN shell
perl -MCPAN -e shell install Bio::Gonzales
For more information on module installation, please visit the detailed CPAN module installation guide.