NAME

show-align2clustalw.pl - convert mummer alignment files to clustalw format

SYNOPSIS

    # store results in OUTPUT.aln
    perl show-align2clustalw.pl [OPTIONS] <MUMMER_ALIGNMENT.aln> <CLUSTALW_OUTPUT.aln>

    # print results to standard output
    perl show-align2clustalw.pl [OPTIONS] <MUMMER_ALIGNMENT.aln>
    # or
    perl show-align2clustalw.pl [OPTIONS] <MUMMER_ALIGNMENT.aln> -

DESCRIPTION

This script converts MUMMER's show-aligns output to clustalw formatted output.

OPTIONS

Alternative option names are separated by "|".

--help|h|?: Complete help.

AUTHOR

jw bargsten, <joachim.bargsten at wur.nl>

To install Bio::Gonzales, copy and paste the appropriate command in to your terminal.

cpanm

cpanm Bio::Gonzales

CPAN shell

perl -MCPAN -e shell
install Bio::Gonzales

For more information on module installation, please visit the detailed CPAN module installation guide.

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NAME

SYNOPSIS

DESCRIPTION

OPTIONS

SEE ALSO

AUTHOR

Module Install Instructions