PomBase::Chobo::OntologyData - An in memory representation of an Ontology
Objects of this class represent the part of an ontology that can be stored in a Chado database.
Kim Rutherford <kmr44@cam.ac.uk>
<kmr44@cam.ac.uk>
Please report any bugs or feature requests to kmr44@cam.ac.uk.
kmr44@cam.ac.uk
You can find documentation for this module with the perldoc command.
perldoc PomBase::Chobo::OntologyData
Copyright 2012 Kim Rutherford, all rights reserved.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
Usage : $ontology_data->add(metadata => {..}, terms => [...]); Function: Add some terms, often all terms from one OBO file Args : metadata - the metadata for the terms terms - an array of OntologyTerm objects Return : Nothing, dies on error
Usage : $self->finish(); Function: remove namespaces that are empty due to merging and check that objects and subjects of relationships exist
To install PomBase::Chobo, copy and paste the appropriate command in to your terminal.
cpanm
cpanm PomBase::Chobo
CPAN shell
perl -MCPAN -e shell install PomBase::Chobo
For more information on module installation, please visit the detailed CPAN module installation guide.