Bio::DB::GFF::Aggregator::match_gap -- GFF3 match aggregator
------------------------------------------------- Aggregator method: match_gap Main method: match Sub methods: match -------------------------------------------------
This aggregator is used for GFF3 style gapped alignments, in which there is a single feature of method 'match' with a 'Gap' attribute.
The 'Gap' attribute's format consists of a series of (operartion,length) pairs separated by space characters, for example: 'M8 D3 M6'. (see GFF reference for complete explanation)
This module only recognizes the M and D operators, which should be sufficient for simple nucleotide to nucleotide alignments.
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Bio::DB::GFF, Bio::DB::GFF::Aggregator
Dmitri Bichko
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
To install CGI::Toggle, copy and paste the appropriate command in to your terminal.
cpanm
cpanm CGI::Toggle
CPAN shell
perl -MCPAN -e shell install CGI::Toggle
For more information on module installation, please visit the detailed CPAN module installation guide.