Bio::Graphics::Browser2::Plugin::Blat -- plugin to map sequences against the genome
in human.conf:
[Blat:plugin] blat_executable = /usr/local/gfClient 2bit_dir = /project/gbrowse/2bit_genomes host = blat.server.host.name port = 17780
in mouse.conf:
[Blat:plugin] blat_executable = /usr/local/gfClient 2bit_dir = /project/gbrowse/2bit_genomes host = blat.server.host.name port = 17781
This Gbrowse plugin will take a sequence (entered in the configuration screen) and BLAT it against the genome of the current organism ( port from conf file).
You must, of course, have the Blat server(gfServer) and client(gfClient) installed, and you must set plugin parameters in the conf file: [Blat:plugin] blat_executable = /path/to/your/blat_client
The plugin only works with default psl output format for the moment.
Sean O'Keeffe <okeeffe@molgen.mpg.de>.
To install CGI::Toggle, copy and paste the appropriate command in to your terminal.
cpanm
cpanm CGI::Toggle
CPAN shell
perl -MCPAN -e shell install CGI::Toggle
For more information on module installation, please visit the detailed CPAN module installation guide.