Bio::Graphics::Browser2::Plugin::CreateBlastDB -- a plugin that creates a Blast-formatted database from a Bio::DB::GFF database
in 0X.organism.conf: [CreateBlastDB:plugin] formatdb_executable = /usr/local/BLAST/formatdb blast_db_folder = /home/username/my/blast_db/folder blast_db_name = myname.fas
This Gbrowse plugin will take a sequence database, extract all sequences in it, and create a Blast-formatted database in the folder configured in the 0X.organism.conf file
You must, of course, have the NCBI Blast suite of programs installed, you must have configured the plugin to be visible, and you must set two parameters in the 0X.organism.conf file: [CreateBlastDB:plugin] formatdb_executable = /usr/local/BLAST/formatdb blast_db_folder = /home/username/my/blast_db/folder blast_db_name = myname.fas
To install CGI::Toggle, copy and paste the appropriate command in to your terminal.
cpanm
cpanm CGI::Toggle
CPAN shell
perl -MCPAN -e shell install CGI::Toggle
For more information on module installation, please visit the detailed CPAN module installation guide.