generate_bgc_report.pl - This script generates customizable PDF reports of antiSMASH results (i.e., gene cluster filter)
version 0.191620
generate_bgc_report.pl - Parses and filters biosynthetic gene cluster information from antiSMASH analyses and report these in PDF or docx reports
This documentation refers to antismash-parser version 0.0.1
$0 [options] --path <biosynml_path> --taxdir <dir>
Path to the output file of antismash, which can be either the biosynML.xml file (antiSMASH 3-4) or the regions.js (antiSMASH 5).
Your report can be either in PDF or docx format. Choose pdf or docx [default: pdf].
Output filename. [default: bgc_report]
Filter the report for only a selection of biosynthetic gene cluster types. [default: none]
print the usual program information
Loic MEUNIER <lmeunier@uliege.be>
Denis BAURAIN <denis.baurain@uliege.be>
This software is copyright (c) 2019 by University of Liege / Unit of Eukaryotic Phylogenomics / Loic MEUNIER and Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bio::Palantir, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Palantir
CPAN shell
perl -MCPAN -e shell install Bio::Palantir
For more information on module installation, please visit the detailed CPAN module installation guide.