Bio::Palantir::Explorer - front-end class for Bio::Palantir::Explorer module, wich handles the NRPS/PKS domain exploration without pre-existing consensus architecture
This module implements classes and their methods for exploring NRPS/PKS domain architecture without any previous consensus imposed. Note that this application mode is only based on the expertise of the user. The input used by
Palantir::Refiner is the FASTA file of a NRPS/PKS BGC (e.g., nrps_bgc.fasta), which can be extracted from antiSMASH HTML webpages or with the script
bin/extract_fasta.pl (which uses
The exploratory Biosynthetic Gene Cluster (BGC) information is hierarchically organized as follows:
ClusterFasta.pm: contains attributes and methods for the BGC Cluster level, including an array of GeneFasta objects
GeneFasta.pm: contains attributes and methods for the BGC Gene level, including an array of DomainPlus objects (if NRPS/PKS BGCs)
DomainPlus.pm: contains attributes and methods for the BGC Domain level
The Domain information is inherited from
Palantir::Refiner::DomainPlus, and as no consensus architecture is defined, Module information is not applicable.
Loic MEUNIER <email@example.com>
This software is copyright (c) 2019 by University of Liege / Unit of Eukaryotic Phylogenomics / Loic MEUNIER and Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.