Luis M Rodríguez-R
and 1 contributors

AUTHOR

Luis M. Rodriguez-R < lmrodriguezr at gmail dot com >

DESCRIPTION

Detects (or predicts) loci at the given genomes. Loci identified must be defined by a .bme file (see examples for files in the proper format). If used with vntrs.bme is similar to the first part of polloc_vntrs.pl.

LICENSE

This script is distributed under the terms of The Artistic License. See LICENSE.txt for details.

SYNOPSIS

perl polloc_detect.pl arguments

The arguments must be in the following order:

Configuration

The configuration file (a .bme or .cfg file).

Output GFF

A path to the output GFF to be generated.

Inseqs

All the following arguments will be treated as input files. Each file is assumed to contain a genome (that can contain one or more sequence) in [multi-]fasta format.

Run perl polloc_vntrs.pl without arguments to see the help message.

SEE ALSO