Luis M Rodríguez-R
and 1 contributors

AUTHOR

Luis M. Rodriguez-R < lmrodriguezr at gmail dot com >

DESCRIPTION

Groups loci listed in GFF version 3, and produces a CSV file with the IDs of the grouped loci (one line per group).

LICENSE

This script is distributed under the terms of The Artistic License. See LICENSE.txt for details.

SYNOPSIS

perl polloc_group.pl arguments

The arguments must be in the following order:

Configuration

The configuration file (a .bme or .cfg file).

Input GFF

A path to the GFF file containing the loci to be grouped.

Output CSV

A path to the CSV file to be generated.

Inseqs

All the following arguments will be treated as input files. Each file is assumed to contain a genome (that can contain one or more sequence) in [multi-]fasta format.

Run perl polloc_vntrs.pl without arguments to see the help message.

SEE ALSO