Bio::Polloc::Genome - A group of sequences from the same organism
Email lmrodriguezr at gmail dot com
This package is licensed under the Artistic License - see LICENSE.txt
Bio::Polloc::Polloc::Root
Methods provided by the package
The basic initialization method
Arguments
The name of the genome (from file if not provided).
The file containing the (multi-)fasta with the genome.
Builds a set of genomes.
An arrayref containing the files from which genomes must be build.
An arrayref containing the names of the genomes (in the same order of the files).
Sets/gets the file containing the genome
Gets the collection of sequences.
Returns
An array of Bio::Seq objects.
Search a sequence by ID
The id (str) of the sequence.
The sequence (Bio::Seq) or undef.
undef
Gets/sets the name of the genome. If no name is set, tries to use the file instead.
Methods intended to be used only within the scope of Bio::Polloc::*
5 POD Errors
The following errors were encountered while parsing the POD:
Expected '=item *'
To install Bio::Polloc, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Polloc
CPAN shell
perl -MCPAN -e shell install Bio::Polloc
For more information on module installation, please visit the detailed CPAN module installation guide.