Bio::Polloc::Rule::composition - A rule of type composition
Email lmrodriguezr at gmail dot com
Methods provided by the package
Generic initialization method.
Counts the number of letters or groups of letters and compares this number with the requested range (See Bio::Polloc::Rule::composition::_qualify_value)
The input sequence(s).
An array reference populated with Bio::Polloc::Locus::composition objects or undef. Note that this method returns one Locus per sequence at most.
Stringifies the rule.
Sets/gets the residues
Residues (str, optional)
Residues (str or undef)
Sets/gets the minimum percentage
Percentage (float, optional)
Percentage (float or undef)
Sets/gets the maximum percentage
Methods intended to be used only within the scope of Bio::Polloc::*
Implements the _qualify_value from the Bio::Polloc::RuleI interface
Value (str or ref-to-hash or ref-to-array). The supported keys are:
The residues to take into account as a string
The allowed (perc.) range in the format 20..50
The minimum percentage (ignored if range is set)
The maximum percentage (ignored if range is set)
Value (ref-to-hash or undef)
To install Bio::Polloc, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Polloc
CPAN shell
perl -MCPAN -e shell install Bio::Polloc
For more information on module installation, please visit the detailed CPAN module installation guide.