Luis M Rodríguez-R
and 1 contributors

NAME

Bio::Polloc::Rule::pattern - A rule determined by a pattern

AUTHOR - Luis M. Rodriguez-R

Email lmrodriguezr at gmail dot com

IMPLEMENTS OR EXTENDS

PUBLIC METHODS

Methods provided by the package

new

The basic initialization method

execute

Executes the search and returns the loci.

Arguments

The sequence (-seq) as a Bio::Seq or a Bio::SeqIO object.

Returns

An array reference populated with Bio::Polloc::Locus::pattern objects.

stringify_value

Produces a string with the value of the rule.

value

Arguments

A str, hashref or arrayref. The supported keys are:

-pattern str

The pattern to be identified. For example: TAT[TA]AC.

Return

Value (hashref or undef).

INTERNAL METHODS

Methods intended to be used only within the scope of Bio::Polloc::*

_parameters

_executable

Gets the executable of fuzznuc.

_initialize