CLIPSeqTools::CompareApp::compare_counts - Compare tables with counts.
clipseqtools compare_counts [options/parameters]
Do Upper Quartile normalization on specified value column of one or more tables. For each table, all entries are sorted by descending value (specified by val_col). All values are divided by the value of the 25%th entry. The 25%th entry is specified by the table with the fewer entries after the entries with value lower than val_thres in all tables are excluded.
Input options. --table <Str> input table file/files. Use option multiple times to specify multiple table files. --t_name <Str> table name. Use option multiple times to give names to all the tables. The number of table names must match the number of input table files. If not set, numbers are used instead. These names will be used in the output files. --key_col <Str> name for the column/columns to use as a key. It must be unique for each table row. Use option multiple times to specify multiple columns. --val_col <Str> name of column with values to be normalized. Output. --o_table <Str> output table file/files. Use option multiple times to give multiple files. Must be given as many times as the table option. Other options. --val_thres <Num> rows with value lower or equal than val_thres are not used for normalization. Default: 0 -v --verbose print progress lines and extra information. -h -? --usage --help print help message
To install CLIPSeqTools, copy and paste the appropriate command in to your terminal.
cpanm
cpanm CLIPSeqTools
CPAN shell
perl -MCPAN -e shell install CLIPSeqTools
For more information on module installation, please visit the detailed CPAN module installation guide.