GenOO::Transcript::Part - A functional region within a transcript consisting of spliceable elements
# This is the main region object. # Represents a functional region within # a transcript eg 3'UTR, CDS or 5'UTR # It supports splicing. # To initialize my $region = GenOO::Transcript::Part->new({ species => undef, strand => undef, #required chromosome => undef, #required start => undef, #required stop => undef, #required name => undef, sequence => undef, transcript => undef, #backreference to a L<GenOO::Transcript> object splice_starts => undef, #reference to an array of splice starts splice_stops => undef, #reference to an array of splice stops });
A transcript part can be any functional part of a transcript. It is usually used for the 3'UTR 5'UTR, coding region (CDS) etc. It has a genomic location (start, stop, chromosome, strand), it is spliceable (splice_starts, splice_stops, exons, introns etc) and is connected to a transcript object.
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To install GenOO, copy and paste the appropriate command in to your terminal.
cpanm
cpanm GenOO
CPAN shell
perl -MCPAN -e shell install GenOO
For more information on module installation, please visit the detailed CPAN module installation guide.