Bioinfo::PBS - my perl module and CLIs for Biology
version 0.1.15
use Bioinfo::PBS; my $para = { cpu => 2, name => 'blast', cmd => 'ls -alh; pwd', }; my $pbs_obj = Bioinfo::PBS->new($para); $pbs_obj->qsub;
This module is created to simplify process of task submitting in PBS system, and waiting for the finish of multiple tasks.
cpu number that will apply
prefix of output of STANDARD and ERR
the command that will be submitted to cluster
the path that cmd will execute in
the job id of qsub
the priority during the process of Batch submmit in Queue
get shell file that will used in qsub
submit the program to cluster
wait until the program finished in cluster
get the status of job. 0 will be return if the job has completed
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Yan Xueqing <yanxueqing621@163.com>
This software is copyright (c) 2017 by Yan Xueqing.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.
To install Bioinfo, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bioinfo
CPAN shell
perl -MCPAN -e shell install Bioinfo
For more information on module installation, please visit the detailed CPAN module installation guide.