Bio::Maxd - Perl extension for storing and retrieving data from maxd
use Bio::Maxd; my $maxd_db = new Bio::Maxd (-user=>'user', -pass=>'pass', -host=>'host', -dbase=>'database'); $maxd_db->load_file(-file=>'path_to_data_file', -experiment=>'experimentName', -array_type=>'geneChipName'); $maxd_db->disconnect();
Bio::Maxd provides methods for uploading and retrieving data to/from a maxd (MySQL) database.
"maxd" is a data warehouse and visualization environment for microarray expression data developed by the Microarray Group at Manchester Bioinformatics (http://www.bioinf.man.ac.uk/microarray/)
new(), This is the constructor for Bio::Maxd.
my $maxd_db = new Bio::Maxd();
This is the constructor for Bio::Maxd. It establishes a database connection, or session, to the requested database. Parameters:
load_file(), Parses and loads a datafile into a maxd database..
export(), Exports data from maxd database..
version() Returns Bio::Maxd version
$ENV{'MAXD_USERID'}, contains userid/password
$ENV{'MAXD_HOSTDB'}, contains database host
$ENV{'MAXD_TEMPLATES'}, directory for export templates
See the 'examples' directory in the distribution for scripts loadData and exportData
None by default.
None, but that does not mean there are not any.
Copyright (C) 2002 Jaime Prilusky. All rights reserved.
Jaime Prilusky <Jaime.Prilusky@weizmann.ac.il>
perl(1).
To install Bio::Maxd, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Maxd
CPAN shell
perl -MCPAN -e shell install Bio::Maxd
For more information on module installation, please visit the detailed CPAN module installation guide.