++ed by:
PROCH

1 PAUSE user
4 non-PAUSE users.

Andrea Telatin ⚗️
and 1 contributors

NAME

Reader.pl and othe scripts - Demo scripts implementing FASTX::Reader

USAGE

  reader.pl FILE1 FILE2 ... FILE{n}

If no arguments are supplied, it will parse two test files contained in the script directory

NOTES

The printed sequences can be slightly different from the input file as the header will be {name}{space}{comments}, but any white space (including a tab) could be the comment separator

OTHER SAMPLE SCRIPTS

The scripts directory contains scripts to test the library:

Reader.pl

This script: a minimal implementation of the FASTX::Reader module to show how to parse a FASTA/FASTQ files. It will work with demo files if no arguments are supplied.

FastqReader.pl

A script to read and print sequences from FASTQ files using the faster getFastqRead() method. It will work with demo files if no arguments are supplied.

Counter.pl

A script to count the number of sequences in both FASTA/FASTQ files. It will work with demo files if no arguments are supplied.

Stdin.pl

A script to print sequences from STDIN.

WEBSITES

https://github.com/telatin/FASTQ-Parser

The GitHub repository for this module

https://metacpan.org/pod/FASTX::Reader

The MetaCPAN page for this module

AUTHORS

Andrea Telatin
Fabrizio Levorin