Reader.pl and othe scripts - Demo scripts implementing FASTX::Reader
reader.pl FILE1 FILE2 ... FILE{n}
If no arguments are supplied, it will parse two test files contained in the script directory
The printed sequences can be slightly different from the input file as the header will be {name}{space}{comments}, but any white space (including a tab) could be the comment separator
{name}{space}{comments}
The scripts directory contains scripts to test the library:
scripts
This script: a minimal implementation of the FASTX::Reader module to show how to parse a FASTA/FASTQ files. It will work with demo files if no arguments are supplied.
A script to read and print sequences from FASTQ files using the faster getFastqRead() method. It will work with demo files if no arguments are supplied.
getFastqRead()
A script to count the number of sequences in both FASTA/FASTQ files. It will work with demo files if no arguments are supplied.
A script to print sequences from STDIN.
The GitHub repository for this module
The MetaCPAN page for this module
To install FASTX::Reader, copy and paste the appropriate command in to your terminal.
cpanm
cpanm FASTX::Reader
CPAN shell
perl -MCPAN -e shell install FASTX::Reader
For more information on module installation, please visit the detailed CPAN module installation guide.