NAME

Bio::Chado::Schema::Library::LibrarySynonym

NAME

Bio::Chado::Schema::Library::LibrarySynonym

ACCESSORS

library_synonym_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'library_synonym_library_synonym_id_seq'

synonym_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

library_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

pub_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

The pub_id link is for relating the usage of a given synonym to the publication in which it was used.

is_current

  data_type: 'boolean'
  default_value: true
  is_nullable: 0

The is_current bit indicates whether the linked synonym is the current -official- symbol for the linked library.

is_internal

  data_type: 'boolean'
  default_value: false
  is_nullable: 0

Typically a synonym exists so that somebody querying the database with an obsolete name can find the object they are looking for under its current name. If the synonym has been used publicly and deliberately (e.g. in a paper), it my also be listed in reports as a synonym. If the synonym was not used deliberately (e.g., there was a typo which went public), then the is_internal bit may be set to "true" so that it is known that the synonym is "internal" and should be queryable but should not be listed in reports as a valid synonym.

RELATIONS

pub

Type: belongs_to

Related object: Bio::Chado::Schema::Pub::Pub

library

Type: belongs_to

Related object: Bio::Chado::Schema::Library::Library

synonym

Type: belongs_to

Related object: Bio::Chado::Schema::Sequence::Synonym

AUTHOR

Robert Buels <rbuels@cpan.org>

COPYRIGHT AND LICENSE

This software is copyright (c) 2009 by Robert Buels.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

cpanm Bio::Chado::Schema

perl -MCPAN -e shell
install Bio::Chado::Schema