Return all instances of the TaxonomicGrouping entity.
We associate with most genomes a "taxonomy" based on the NCBI taxonomy. This includes, for each genome, a list of ever larger taxonomic groups.
Example:
all_entities_TaxonomicGrouping -a
would retrieve all entities of type TaxonomicGrouping and include all fields in the entities in the output.
The TaxonomicGrouping entity has the following relationship links:
Return all fields.
Display a list of the fields available for use.
Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:
The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.
To install Bio::KBase, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::KBase
CPAN shell
perl -MCPAN -e shell install Bio::KBase
For more information on module installation, please visit the detailed CPAN module installation guide.